HsaEX6089757 @ hg19
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:11085]
Coordinates
chr10:98923137-98945683:-
Coord C1 exon
chr10:98945235-98945683
Coord A exon
chr10:98924576-98924647
Coord C2 exon
chr10:98923137-98923208
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTTCTTCCTCCAGGGA
3' ss Score
12.36
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGGAGAGGGAGACGCAGGCGGCGAAACGGCAGAGGAGCCGAGCCCCCTCCGCCCAAGGCGCCCTCCCTCCGTCCGCGCACAGGCGCCGTCGCTTGGAGGAGCAAGGTGCCTCCCAGCCCGCAGGGGCGCCGCGCGCAAGCCCGCGGGCTCTTCGGTGGCTCTGCCCCGGGACTGCACCTGGAGGCGGCCCCGGACGGGGATGGTCAGCGGCTGCTGCCGTCTGGCTCGCGAGCGGGACGCTGTGAGGGCACCATGGCGCTGACTCCCGGGTGGGGGTCCTCGGCGGGGCCGGTCCGGCCGGAGCTCTGGCTGCTGCTGTGGGCAGCCGCGTGGCGCCTGGGTGCCTCGGCGTGCCCCGCCCTCTGCACCTGCACCGGAACCACGGTGGACTGCCACGGCACGGGGCTGCAGGCCATTCCCAAGAATATACCTCGGAACACCGAGCGCCT
Seq A exon
GGAACTCAATGGCAACAACATCACTCGGATCCATAAGAATGACTTTGCGGGGCTCAAGCAGCTGCGGGTGCT
Seq C2 exon
GCAGCTGATGGAGAACCAGATTGGAGCAGTGGAACGTGGTGCTTTTGATGACATGAAGGAGCTGGAGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=57.1),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCTGCTGCTGTGG
R:
CGTTCCACTGCTCCAATCTGG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)