MmuEX6032825 @ mm10
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41727070-41743492:-
Coord C1 exon
chr19:41743212-41743492
Coord A exon
chr19:41729055-41729126
Coord C2 exon
chr19:41727070-41727141
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCCTTTCTCTCCCAGGGA
3' ss Score
12.44
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GGATAGCACCTGGAGCTAGCCCCGGACGGGGATGGTCAGCGGCTGCGGCCGTCTGGCACGCGAACGGGACACGGCGAAGGCACCATGGCGCTAACGCCCCAGCGCGGGTCCTCTTCGGGGTTGAGCCGACCGGAGCTGTGGCTGCTGCTGTGGGCAGCCGCGTGGCGCCTGGGGGCCACGGCGTGCCCCGCCCTCTGCACCTGCACCGGCACTACGGTGGACTGCCACGGCACGGGTTTGCAGGCCATCCCCAAGAACATCCCACGGAACACCGAGCGCCT
Seq A exon
GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT
Seq C2 exon
GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=42.4),PF138551=LRR_8=PU(34.7=25.8)
A:
PF138551=LRR_8=FE(42.1=100)
C2:
PF138551=LRR_8=PD(14.3=28.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCTGCTGCTGTGG
R:
AGCTCCGATCTGGTTCTCCAT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types