HsaEX6089757 @ hg38
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit guidance ligand 1 [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr10:97163380-97185920:-
Coord C1 exon
chr10:97185478-97185920
Coord A exon
chr10:97164819-97164890
Coord C2 exon
chr10:97163380-97163451
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTTCTTCCTCCAGGGA
3' ss Score
12.36
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGGAGACGCAGGCGGCGAAACGGCAGAGGAGCCGAGCCCCCTCCGCCCAAGGCGCCCTCCCTCCGTCCGCGCACAGGCGCCGTCGCTTGGAGGAGCAAGGTGCCTCCCAGCCCGCAGGGGCGCCGCGCGCAAGCCCGCGGGCTCTTCGGTGGCTCTGCCCCGGGACTGCACCTGGAGGCGGCCCCGGACGGGGATGGTCAGCGGCTGCTGCCGTCTGGCTCGCGAGCGGGACGCTGTGAGGGCACCATGGCGCTGACTCCCGGGTGGGGGTCCTCGGCGGGGCCGGTCCGGCCGGAGCTCTGGCTGCTGCTGTGGGCAGCCGCGTGGCGCCTGGGTGCCTCGGCGTGCCCCGCCCTCTGCACCTGCACCGGAACCACGGTGGACTGCCACGGCACGGGGCTGCAGGCCATTCCCAAGAATATACCTCGGAACACCGAGCGCCT
Seq A exon
GGAACTCAATGGCAACAACATCACTCGGATCCATAAGAATGACTTTGCGGGGCTCAAGCAGCTGCGGGTGCT
Seq C2 exon
GCAGCTGATGGAGAACCAGATTGGAGCAGTGGAACGTGGTGCTTTTGATGACATGAAGGAGCTGGAGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'0-1,'0-0,2-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=57.1),PF138551=LRR_8=PU(8.2=10.2)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCTGCTGCTGTGG
R:
CGTTCCACTGCTCCAATCTGG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains