DreEX0073433 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:486791-508194:-
Coord C1 exon
chr13:507880-508194
Coord A exon
chr13:488019-488090
Coord C2 exon
chr13:486791-486862
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAATGCATCTTTATTTTCAGGGA
3' ss Score
7.84
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CGCTGGAGCAACTCTAGTAGAGAGAGAGAGAGAGAGAGGGAGAGTTTTTTTGTGTGTGTGTGTGTGCGCGCATGTGTGTGTGTGTGCGCGCATTGGATTTGGAAGCGCTGTAGTTTTCTCGGGGAGTCTTAGGAAGATCATGCCTGCGAGAGGAGGATGTTGTCTGCTGGAGGTGTGTGTGTGGGTTTTGCTGCTGGTGTGTAAGACTGGCAGCGGGTGCCCGGCGCTCTGCACATGCAGCGGCACCACTGTGGACTGCCACGGGCTCGGACTCAAAAACATACCCAGGAACATTCCCAGAAACACCGAGAGGCT
Seq A exon
GGAACTGAATGGAAACAACCTCACACGCATCAACAGAAACGACTTCACTGGCCTCAAGTATCTTCGAGTACT
Seq C2 exon
GCAGCTGATGGAGAACCAGATTGTAACGGTGGAGCGCGGCGCGTTCGACGAGATGAGAGAGCTGGAGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=47.5),PF138551=LRR_8=PU(8.2=8.5)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
ENSDART00000066080fB6126
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGTGTGTGTGGGTTTT
R:
CGCTCCACCGTTACAATCTGG
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]