RnoEX0083436 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260975298-260992366:-
Coord C1 exon
chr1:260992011-260992366
Coord A exon
chr1:260976880-260976951
Coord C2 exon
chr1:260975298-260975369
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTTTTCTCTGCCAGGGA
3' ss Score
11.23
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
CTGGGAGCATCTAGGTGCCACTCGAGCCGCAAGGGCGCATCGTACGATCCCCCCGGCTCTTCGGTCCCTCGGTGGGGATAGCACCTGGAGATAGCCCCGGACGGGGATGGTCAGCGGCTGCGGCCGTCTGACACGCGAGCGGGACACGGCGAGGGCACCATGGCGCTAACGCCCCAGCGCGGGTCCTCTTCGGGGTTGAGCCGACCAGAGCTGTGGCTGCTGCTATGGGCAGCCGCGTGGCGCCTGGGGGCCACGGCGTGCCCCGCCCTCTGCACCTGCACCGGCACTACAGTGGACTGCCACGGCACGGGTTTGCAGGCCATCCCCAAGAACATCCCACGGAACACCGAGCGCCT
Seq A exon
GGAACTCAATGGTAACAATATCACTCGGATCCATAAGAATGACTTTGCTGGGCTCAAGCAGCTTCGAGTGTT
Seq C2 exon
GCAGCTGATGGAGAACCAGATTGGAGCTGTGGAACGGGGAGCTTTTGATGACATGAAGGAGTTGGAGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=42.4),PF138551=LRR_8=PU(8.8=7.6)
A:
PF138551=LRR_8=FE(42.1=100)
C2:
PF138551=LRR_8=FE(42.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCTGCTGCTATGGG
R:
CGTTCCACAGCTCCAATCTGG
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]