GgaEX6040923 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25756845-25761206:+
Coord C1 exon
chr6:25756845-25757068
Coord A exon
chr6:25758654-25758765
Coord C2 exon
chr6:25761102-25761206
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTCTGATCTTAAGACA
3' ss Score
3.24
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTATCAATGAGAGAGATGTCCTTGGGTCCCAGCTTGTTCGACGCAACGATGAGGTGGCTCTTCTCTATGAAAAGATCAAAATCCAGCAATCCATCTTAAACAAGGGTGAGACTCAGTACAGGCAGAGAATGGAAGACATCCGGCTTCTCAAGCTGGAGATCAGAAAACTTCGTCGTGAGAAGGGAATACTTGGTAAAACCGTGGCTAACGTAGAGGAACTCAG
Seq A exon
ACAGGAGGTTCATCACATGCGGAAGGAGCTATTAAGAGAACAGACTCGGTGCAAAGTTTTGGAAGAAGAACTGGAGAATCCCTTGAATGTTCACAGATGGAGAAAACTGGAG
Seq C2 exon
GCCAGTGACCCAAGTACCTATGAACTGATCCAGAAAATACAGAGGCTACAGAAGCAACTTATCAGCAAGACAGGTGAAGTGATAGAAAAAGAACTGCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'15-17,'15-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF060057=DUF904=PU(63.0=61.3)
A:
PF060057=DUF904=PD(35.6=68.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGAGGTGGCTCTTCTCT
R:
ACCTGTCTTGCTGATAAGTTGCT
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]