HsaEX0013064 @ hg19
Exon Skipping
Gene
ENSG00000120051 | CCDC147
Description
coiled-coil domain containing 147 [Source:HGNC Symbol;Acc:26676]
Coordinates
chr10:106160438-106166551:+
Coord C1 exon
chr10:106160438-106160661
Coord A exon
chr10:106163487-106163598
Coord C2 exon
chr10:106166447-106166551
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCAAGTTTGTCTTATTCAGACA
3' ss Score
4.79
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTCATCAGTGAGAGAGATATCCTGGGGTCTCAGCTTGTTCGGCGCAATGATGAGTTAGCTTTGCTCTATGAGAAGATCAAGATCCAACAGTCTGTGCTGAATAAAGGGGAGAGCCAGTACAACCAGAGGTTGGAGGACATGAGAATCCTCAGACTTGAGATCAAGAAGCTTCGCCGGGAAAAGGGGATTCTTGCCAGGAGTATGGCTAATGTTGAAGAACTCAG
Seq A exon
ACAGGAGTTTTTTCACATGCAAAGAGAATTGTTGAAGGAGAGGACACGCTGCCGAGCCCTGGAGGAGGAGCTGGAGAATCCCCTGAATGTGCACAGATGGAGGAAGCTCGAG
Seq C2 exon
GCCAGCGACCCCAATGCATATGAGCTGATACAGAAAATTCACACCCTGCAGAAGCGTCTCATCAGCAAGACTGAAGAGGTGGTTGAAAAAGAGCTGCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-'15-16,'15-15,16-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGGCGCAATGATGAGTT
R:
CTGATGAGACGCTTCTGCAGG
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)