MmuEX6033556 @ mm9
Exon Skipping
Gene
ENSMUSG00000046585 | Ccdc147
Description
coiled-coil domain containing 147 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:48057938-48063059:+
Coord C1 exon
chr19:48057938-48058161
Coord A exon
chr19:48060931-48061042
Coord C2 exon
chr19:48062955-48063059
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACCAGGCTTGTCTTTTCCAGGCA
3' ss Score
8.68
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG
Seq A exon
GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG
Seq C2 exon
GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAACTTGTCCGGCGAAAC
R:
GCTTCTGCAGGGTGTGGATTT
Band lengths:
252-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: