BtaEX6100665 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007243 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr26:25230441-25235873:+
Coord C1 exon
chr26:25230441-25230664
Coord A exon
chr26:25233808-25233919
Coord C2 exon
chr26:25235769-25235873
Length
112 bp
Sequences
Splice sites
3' ss Seq
AGAAAGTTTGACTTATTTAGGCA
3' ss Score
1.99
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTCATCAGCGAGAGAGATATCCTTGGGTCACAGCTAGTTCGGCGCAATGATGAGTTGGCTTTGCTCTATGAGAAGATCAAGATTCAGCAGTCTGTGCTGAATAAAGGCGAGAGCCAGTATAACCAGAGGTTGGAGGACATGAGAATCCTCAAACTTGAGATCAAGAAGCTTCGCCGGGAGAAAGGGATTCTTGCCAGGAGTGTGGCCAATGTCGATGAACTCAG
Seq A exon
GCAGGAGCTTTTTCACACGCAAAGAGAGTTCCTGAAGGAGAGGACGAGATGCCGAGCCCTGGAGGAGGAACTGGAGAACCCCATGAACGTGCACAGATGGAGGAAGCTTGAG
Seq C2 exon
GCCAGTGACCCCAGTACCTTTGAGCTGATACAGAAAATACATACACTGCAGAAGCGTCTCATCAGCAAGACGGAAGAGGTGGTCGAAAAAGAGCTGCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007243-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGGCGCAATGATGAGTT
R:
TTGCTGATGAGACGCTTCTGC
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]