HsaEX1045829 @ hg38
Exon Skipping
Gene
ENSG00000120051 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr10:104403244-104406793:+
Coord C1 exon
chr10:104403244-104403344
Coord A exon
chr10:104403733-104403840
Coord C2 exon
chr10:104406689-104406793
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTCTTATTCAGACAGGAG
3' ss Score
0.66
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
TCCCCTAGAGAAGCTCTCTTGCCTGCCACGATGTAAGATGTTCCTTTGCTCTCCCTTTGTCTTCCTCCATGATTGTGAGGCCTCTCCAGCCATGTGGAACT
Seq A exon
GAGTTTTTTCACATGCAAAGAGAATTGTTGAAGGAGAGGACACGCTGCCGAGCCCTGGAGGAGGAGCTGGAGAATCCCCTGAATGTGCACAGATGGAGGAAGCTCGAG
Seq C2 exon
GCCAGCGACCCCAATGCATATGAGCTGATACAGAAAATTCACACCCTGCAGAAGCGTCTCATCAGCAAGACTGAAGAGGTGGTTGAAAAAGAGCTGCTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120051-'28-23,'28-22,29-23
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCTCTCTTGCCTGCC
R:
TGGAGGAGCAGCTCTTTTTCA
Band lengths:
198-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains