GgaEX6040923 @ galGal4
Exon Skipping
Gene
ENSGALG00000008417 | CFAP58
Description
cilia and flagella associated protein 58 [Source:HGNC Symbol;Acc:HGNC:26676]
Coordinates
chr6:23853145-23857506:+
Coord C1 exon
chr6:23853145-23853368
Coord A exon
chr6:23854954-23855065
Coord C2 exon
chr6:23857402-23857506
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTCTGATCTTAAGACA
3' ss Score
3.24
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTTATCAATGAGAGAGATGTCCTTGGGTCCCAGCTTGTTCGACGCAACGATGAGGTGGCTCTTCTCTATGAAAAGATCAAAATCCAGCAATCCATCTTAAACAAGGGTGAGACTCAGTACAGGCAGAGAATGGAAGACATCCGGCTTCTCAAGCTGGAGATCAGAAAACTTCGTCGTGAGAAGGGAATACTTGGTAAAACCGTGGCTAACGTAGAGGAACTCAG
Seq A exon
ACAGGAGGTTCATCACATGCGGAAGGAGCTATTAAGAGAACAGACTCGGTGCAAAGTTTTGGAAGAAGAACTGGAGAATCCCTTGAATGTTCACAGATGGAGAAAACTGGAG
Seq C2 exon
GCCAGTGACCCAAGTACCTATGAACTGATCCAGAAAATACAGAGGCTACAGAAGCAACTTATCAGCAAGACAGGTGAAGTGATAGAAAAAGAACTGCTCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'16-18,'16-15,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGAGGTGGCTCTTCTCT
R:
ACCTGTCTTGCTGATAAGTTGCT
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]