GgaEX6041017 @ galGal3
Exon Skipping
Gene
ENSGALG00000008905 | F1NEB3_CHICK
Description
NA
Coordinates
chr6:28895083-28905266:+
Coord C1 exon
chr6:28895083-28895152
Coord A exon
chr6:28901602-28901635
Coord C2 exon
chr6:28905132-28905266
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTATCCTATGCAGCCT
3' ss Score
8.31
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAGCGTTAACGGTGCTTTGTCCCTTCGGGTTCTCTCACTGATCCTTTTCCTAGGGAACACATATGTGTCC
Seq A exon
CCTTCCTGGTCCTCCCTGGCCAACCTGGTGAATG
Seq C2 exon
ATGAGGCTGATGACTATGAGTACGAGTACTATGATGAATACGTGCAAGTGGAAGAGAAACTATCCCAAGAGATTCTGCTCTTGGGGGAACCTGACTGGGTCGACCCATCCCCTCTCTACAGAAGAATCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGTGCTTTGTCCCTTCG
R:
AGTTTCTCTTCCACTTGCACGT
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]