HsaEX6090536 @ hg38
Exon Skipping
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113553026-113574405:+
Coord C1 exon
chr10:113553026-113553190
Coord A exon
chr10:113567489-113567525
Coord C2 exon
chr10:113574289-113574405
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTTTTGTTTTTCAGTTC
3' ss Score
11.11
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CCTGAATCCTTGGAGACTGACATTTTTCCCCCCTAAAGGCATAGACAACAAAAGAAATTTTATTGAGAGGAAAACACAAGTCCTTAAACTGCAAAGATGTTTGCCAGGATGTCTGATCTCCATGTTCTGCTGTTAATGGCTCTGGTGGGAAAGACAGCCTGTGGG
Seq A exon
TTCTCCCTGATGTCTTTATTGGAAAGCCTGGACCCAG
Seq C2 exon
ACTGGACCCCTGACCAGTATGATTACAGCTACGAGGATTATAATCAGGAAGAGAACACCAGTAGCACACTTACCCACGCTGAGAATCCTGACTGGTACTACACTGAGGACCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702-'1-12,'1-4,5-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTAATGGCTCTGGTGGG
R:
GCGTGGGTAAGTGTGCTACTG
Band lengths:
116-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains