MmuEX6033756 @ mm9
Exon Skipping
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56362402-56381373:+
Coord C1 exon
chr19:56362402-56362542
Coord A exon
chr19:56372505-56372541
Coord C2 exon
chr19:56381263-56381373
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTTTTGCTTTCCAGCTC
3' ss Score
10.61
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCCCCACCCCAAAGGAATAGACAAGAAGAGAAACTGCAGAGGGAGAGAACAGAGAGGCCTTCAACTACACAGATATTTGTCAGGATGTTGGTGTTCCGTGTCCTGCTGCTAATCGCCCTGGTGGGGAAGTCAGTCATTGGG
Seq A exon
CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG
Seq C2 exon
ATTGGACCCCCGATGACTATTACTACAGCTATGAGCAGTCCAGCCCAGACGAAGACCCCAGTGTCACGCAGACCACCCCTGAGAACCCCGACTGGTACTATGAAGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075-'1-5,'1-4,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGAAGTCAGTCATTGGG
R:
AGTACCAGTCGGGGTTCTCAG
Band lengths:
120-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: