HsaEX6090536 @ hg19
Exon Skipping
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:4798]
Coordinates
chr10:115312785-115334164:+
Coord C1 exon
chr10:115312785-115312949
Coord A exon
chr10:115327248-115327284
Coord C2 exon
chr10:115334048-115334164
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTTTTGTTTTTCAGTTC
3' ss Score
11.11
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CCTGAATCCTTGGAGACTGACATTTTTCCCCCCTAAAGGCATAGACAACAAAAGAAATTTTATTGAGAGGAAAACACAAGTCCTTAAACTGCAAAGATGTTTGCCAGGATGTCTGATCTCCATGTTCTGCTGTTAATGGCTCTGGTGGGAAAGACAGCCTGTGGG
Seq A exon
TTCTCCCTGATGTCTTTATTGGAAAGCCTGGACCCAG
Seq C2 exon
ACTGGACCCCTGACCAGTATGATTACAGCTACGAGGATTATAATCAGGAAGAGAACACCAGTAGCACACTTACCCACGCTGAGAATCCTGACTGGTACTACACTGAGGACCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTAATGGCTCTGGTGGG
R:
GCGTGGGTAAGTGTGCTACTG
Band lengths:
116-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)