RnoEX6007843 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277068761-277091135:+
Coord C1 exon
chr1:277068761-277068855
Coord A exon
chr1:277080037-277080073
Coord C2 exon
chr1:277091025-277091135
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCTTTTGTTTTTCAGCTC
3' ss Score
11.76
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGGGGAGACGCCTTCCACCGCACAGATGTCTGTCGTGATGTTGGTGTTCCGTGTTCTGCTGCTAATCGCCCTAGTGGGGAACTCAGCCATCGGG
Seq A exon
CTCTCACTGATGCCATTCATTGCACCTCCAGACCCAG
Seq C2 exon
ATTGGACCCCCGATGACTATTACTACAGTTACGAGCAGTCCAGTCCAGACAAAGACGCCAGTGTCACGCAGACCTCCCCCGAGAACCCCGACTGGTACTATGAAGACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCGTGTTCTGCTGCTA
R:
GTGACACTGGCGTCTTTGTCT
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]