BtaEX0016632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019322 | HABP2
Description
Bos taurus hyaluronan binding protein 2 (HABP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001014868]
Coordinates
chr26:34304685-34325558:+
Coord C1 exon
chr26:34304685-34304839
Coord A exon
chr26:34319208-34319244
Coord C2 exon
chr26:34325448-34325558
Length
37 bp
Sequences
Splice sites
3' ss Seq
TCTGTCATTTTCTCTTTCAGCTC
3' ss Score
12.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GACTGACATTCCCCCCTCCCCCCAAAAGGCAGAGACAACAAAAGAAATTGTATTTAGAGCAAAACAAGAGTTCTTAAACTACAAAGATGTTTGCCAGAATGTCTGATCTCCATGTTCTGCTGTTAATGGTTCTGGCGGGAAAGACAGCCTTCGGG
Seq A exon
CTCTCCCTGCTGTCTTTTCTCACAGAGCCGGACCCAG
Seq C2 exon
ATTGGACTCCTGACCAGTATGAGTACAGCCAAGAGTATAATAACCAGGAAGAGAACGCCAGCAGTACCACTGCCTATTCTGACAACCCTGACTGGTACTACGAAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019322_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGTTCTGGCGGGAAAGAC
R:
GGGTTGTCAGAATAGGCAGTGG
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development