GgaEX6041017 @ galGal4
Exon Skipping
Gene
ENSGALG00000008905 | HABP2
Description
hyaluronan-binding protein 2 preproprotein [Source:RefSeq peptide;Acc:NP_001264308]
Coordinates
chr6:26971704-26982037:+
Coord C1 exon
chr6:26971704-26971923
Coord A exon
chr6:26978373-26978406
Coord C2 exon
chr6:26981903-26982037
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTATCCTATGCAGCCT
3' ss Score
8.31
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TATTTAATCAGGGCAATCTGTTGAACATTAAACAATATTTGAAGTCAGTTATTTGCACTGAGTTAGCTCACCCTCAAATAATTGTGCCTTATCTGAAAAAATGTAGACAACAAGAAAAAGCAAATTTCAGTTCAAATAGAGCAGCATGAGGAGCGTTAACGGTGCTTTGTCCCTTCGGGTTCTCTCACTGATCCTTTTCCTAGGGAACACATATGTGTCC
Seq A exon
CCTTCCTGGTCCTCCCTGGCCAACCTGGTGAATG
Seq C2 exon
ATGAGGCTGATGACTATGAGTACGAGTACTATGATGAATACGTGCAAGTGGAAGAGAAACTATCCCAAGAGATTCTGCTCTTGGGGGAACCTGACTGGGTCGACCCATCCCCTCTCTACAGAAGAATCCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000033102fB8148
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGTGCTTTGTCCCTTCG
R:
AGTTTCTCTTCCACTTGCACGT
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]