GgaEX6042494 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21097387-21100126:+
Coord C1 exon
chr7:21097387-21097743
Coord A exon
chr7:21098448-21098927
Coord C2 exon
chr7:21100009-21100126
Length
480 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTATCTTTCTGCAGGTA
3' ss Score
12.76
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
TTACGAGTCTTCAAATTAGCAAAATCTTGGCCAACTCTAAATATGCTGATTAAGATTATTGGCAACTCAGTGGGGGCTCTGGGAAATTTGACCCTGGTGCTGGCCATCATTGTGTTCATTTTTGCTGTTGTTGGGATGCAGCTGTTTGGGAAAAACTATAAGGAATGTGTCTGCAAAATTGCAAGTGATTGTGTACTTCCACGATGGCACATGCAAGATTTTTTTCACTCTTTTTTGATCGTATTCCGAGTACTGTGTGGAGAATGGATAGAAACGATGTGGGACTGCATGGAGGTTGCTGGCCAAGCAATGTGCCTTACTGTCTTCATGATGGTCATGGTGATTGGAAACCTAGTG
Seq A exon
GTACTGAACTTATTTTTGGCCTTGCTGTTGAGCTCATTTAGTGCTGACAACCTTGCTGTGACAGATGATGATAATGAAATGAACAATCTCCAAATTGCTGTAGCAAGAATGCAGAAGGGCATAGACTATGTGAAAAGAAAAGCACGTGAATTCATCCAGAAGGCTTTTGTTAAAAAACAAAAAGCTTTAGATGAAATCAAACCACTTGAAGATTTGAACAACAAAAACAGTTGTATTTCCAACCATACTGCAGAATTAAGCAAGGACCATGATTACATTAAAGATGTGAACGGAACAACTAGTGGCATAGGCACAGGCAGCAGTGTGGAGAAATACATAATTGATGAAAGTGATTATATGTCATTCATAAACAACCCAAGCCTGACTGTGACAGTGCCCATTGCTGTGGGTGAATCTGACTTTGAAAATTTAAATACAGAGGAGTTTAGTAGTGAATCAGACCTAGAAGAGAGCAAAGAG
Seq C2 exon
AAGCTAAATATGTCCAGTTCATCTGAAGGCAGCACAGTTGACATTGGACTTCCTGCAGAAGAGCAACCAGAAGCTGAACCTGAGGAATCCATGGAGCCAGAGGCCTGCTTCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.750
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.1=100)
A:
PF0052026=Ion_trans=PD(4.2=5.0),PF065128=Na_trans_assoc=PU(61.5=85.0)
C2:
PF065128=Na_trans_assoc=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAATTTGACCCTGGTGC
R:
AGCTTCTGGTTGCTCTTCTGC
Band lengths:
353-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]