GgaEX6042527 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21296762-21299219:-
Coord C1 exon
chr7:21299115-21299219
Coord A exon
chr7:21297818-21298088
Coord C2 exon
chr7:21296762-21297727
Length
271 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTTTTCCCAGAAC
3' ss Score
9.11
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TTTGGAGGTCAAGATATTTTTATGACAGAAGAACAGAAGAAATACTACAATGCAATGAAAAAGTTGGGTTCAAAGAAACCACAGAAGCCTATACCACGACCAGCA
Seq A exon
AACAAATTCCAAGGCATGGTCTTTGATTTTGTAACAAAACAAGCATTTGATATCAGTATCATGATACTTATCTGCCTTAACATGGTCACAATGATGGTAGAAACAGATGACCAGAGTGAAGACATGGAAAACATTTTGTATTGGATTAACCTTGTGTTTATTGTACTTTTCACTGGAGAATTTGTCTTGAAATTGATTTCACTTCGCCATTACTACTTTACCATTGGCTGGAATATTTTTGATTTTGTAGTTGTCATTCTTTCCATAGTAG
Seq C2 exon
GAATGTTCTTAGCTGAGATGATTGAGAAATATTTTGTGTCCCCTACTTTGTTCCGAGTCATCCGACTTGCCAGAATAGGCCGCATTCTGCGTCTCATTAAAGGCGCAAAGGGAATCCGCACTCTGCTTTTTGCTCTGATGATGTCTCTTCCTGCTTTGTTCAACATTGGCCTGCTGCTCTTCTTGGTCATGTTTATCTATGCGATATTTGGCATGTCCAACTTTGCCTACGTTAAGAGGGAAGTTGGGATTGATGACATGTTCAACTTTGAAACATTTGGCAACAGCATGATCTGCCTATTTCAAATTACCACATCTGCTGGCTGGGATGGCTTGTTAGCCCCAATTCTTAACAGTGGGGAACCGGACTGTGACCCTCATAAAGATCATCCAGGGAGCTCTGTTAAAGGCGACTGTGGCAACCCTTCGGTTGGGATTTTCTTCTTTGTCAGCTACATCATCATATCCTTTTTGGTGGTGGTGAACATGTACATTGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'35-32,'35-31,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=51.7),PF0061222=IQ=WD(100=6.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTATACCACGACCAGCA
R:
GCTGTTGCCAAATGTTTCAAAGT
Band lengths:
308-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]