GgaEX6042527 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19318427-19321114:-
Coord C1 exon
chr7:19321010-19321114
Coord A exon
chr7:19319713-19319983
Coord C2 exon
chr7:19318427-19319622
Length
271 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTTTTTTTCCCAGAAC
3' ss Score
9.11
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TTTGGAGGTCAAGATATTTTTATGACAGAAGAACAGAAGAAATACTACAATGCAATGAAAAAGTTGGGTTCAAAGAAACCACAGAAGCCTATACCACGACCAGCA
Seq A exon
AACAAATTCCAAGGCATGGTCTTTGATTTTGTAACAAAACAAGCATTTGATATCAGTATCATGATACTTATCTGCCTTAACATGGTCACAATGATGGTAGAAACAGATGACCAGAGTGAAGACATGGAAAACATTTTGTATTGGATTAACCTTGTGTTTATTGTACTTTTCACTGGAGAATTTGTCTTGAAATTGATTTCACTTCGCCATTACTACTTTACCATTGGCTGGAATATTTTTGATTTTGTAGTTGTCATTCTTTCCATAGTAG
Seq C2 exon
GAATGTTCTTAGCTGAGATGATTGAGAAATATTTTGTGTCCCCTACTTTGTTCCGAGTCATCCGACTTGCCAGAATAGGCCGCATTCTGCGTCTCATTAAAGGCGCAAAGGGAATCCGCACTCTGCTTTTTGCTCTGATGATGTCTCTTCCTGCTTTGTTCAACATTGGCCTGCTGCTCTTCTTGGTCATGTTTATCTATGCGATATTTGGCATGTCCAACTTTGCCTACGTTAAGAGGGAAGTTGGGATTGATGACATGTTCAACTTTGAAACATTTGGCAACAGCATGATCTGCCTATTTCAAATTACCACATCTGCTGGCTGGGATGGCTTGTTAGCCCCAATTCTTAACAGTGGGGAACCGGACTGTGACCCTCATAAAGATCATCCAGGGAGCTCTGTTAAAGGCGACTGTGGCAACCCTTCGGTTGGGATTTTCTTCTTTGTCAGCTACATCATCATATCCTTTTTGGTGGTGGTGAACATGTACATTGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'31-32,'31-30,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=41.9),PF0061222=IQ=WD(100=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTATACCACGACCAGCA
R:
GCTGTTGCCAAATGTTTCAAAGT
Band lengths:
308-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]