GgaEX6042533 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:21399596-21405172:+
Coord C1 exon
chr7:21399596-21399802
Coord A exon
chr7:21401176-21401475
Coord C2 exon
chr7:21404825-21405172
Length
300 bp
Sequences
Splice sites
3' ss Seq
AATGCTTTGTAACCCAACAGGCA
3' ss Score
6.65
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTTGTTCTGGTGATTTTTCTGGGCTCATTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAGGAGCAGAACCAAGCAACTATGGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAGATGTTAGAACAGCTAAAGAAGCAGCAAGAAGAAGCACAG
Seq A exon
GCAACGGCAGCAGTGGCAGCAGCATCAGTTGCATCAAGGGATTTCAGTGGGGTAGGGGGATTAGGAGAACTCTTGGAAAGTTCTTCAGAAGCATCAAAGTTGAGCTCAAAGAGTGCTAAAGAAAGAAGAAACAGAAGGAAGAGAAGAAGACAGAAAGAAATGTCTGAAGCAGAAGACAAGGGAGATATTGACAAGTTCCCCAAGTCCGAGTCAGAAGATAGTATCAGAAGAAAAAGTTTCCGCTTCTCCACAGAAGGAAGTCAACTGACATATGAAAAAAGGTTCACATCTCCCCATCAG
Seq C2 exon
TCTTTGCTAAGCATCCGTGGTTCCCTGTTCTCACCAAGGCGCAACAGCAAAACAAGCATTTTCAGTTTCAGAGGTCGCACAAGGGATATAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTCTTGAGGACAACGAAAGCAGAAGGGATTCTCTCTTTGTTCCAAATCGACATGGAGAAAGGCGTAACAGCAACATCAGTCAGGCCAGTATGTCATCCAGAGTGGTGCCAGCCCTTCCGGCCAATGGGAAGATGCATAGCGCTGTAGATTGCAACGGAGTAGTCTCCTTAGTTGGAGGACCTTCAACTCTAACTTCACCTACTGGACAGCTTCTACCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.520 C2=0.638
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(0.4=1.4),PF119333=DUF3451=PU(0.9=2.9)
A:
PF119333=DUF3451=PU(31.4=71.0)
C2:
PF119333=DUF3451=FE(50.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTGCTGCTGGGAAAACA
R:
GTCCTCAAGAGTGCTGTGCTC
Band lengths:
342-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]