RnoEX0078559 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51582085-51597286:-
Coord C1 exon
chr3:51597080-51597286
Coord A exon
chr3:51588880-51589170
Coord C2 exon
chr3:51582085-51582285
Length
291 bp
Sequences
Splice sites
3' ss Seq
CTTAACTTGATTCTCAACAGGCA
3' ss Score
8.3
5' ss Seq
CAGGTATCG
5' ss Score
9.18
Exon sequences
Seq C1 exon
ACATTGCGTGCAGCTGGGAAAACCTACATGATATTTTTCGTCCTGGTAATTTTCTTGGGCTCGTTTTATTTGGTGAACTTGATCCTGGCTGTGGTGGCCATGGCCTATGAGGAGCAGAACCAGGCCACACTGGAGGAGGCTGAACAGAAGGAGGCAGAGTTTCAGCAGATGCTGGAGCAACTGAAGAAGCAGCAGGAGGAGGCTCAG
Seq A exon
GCAGTGGCTGCAGCCTCCGCGGCATCCAGAGACTTCAGTGGAATAGGAGGGTTAGGAGAACTTCTGGAGAGTTCTTCAGAAGCTTCCAAGTTGAGCTCCAAGAGTGCTAAGGAGTGGAGGAACCGGAGGAAGAAGAGGAGACAGAGGGAACACTTGGAGGGAAACCACAGAGCCGATGGAGACAGGTTTCCCAAGTCGGAATCGGAAGACAGTGTCAAACGAAGAAGCTTCCTGCTCTCCCTGGATGGCAACCCGCTGACTGGTGACAAGAAGCTGTGCTCTCCCCACCAG
Seq C2 exon
TCTCTCTTGAGTATCCGTGGCTCCCTGTTTTCCCCAAGACGCAATAGCAAAACGAGCATTTTCAGCTTCAGAGGTCGGGCGAAGGACGTGGGGTCTGAGAATGACTTTGCAGACGATGAGCACAGCACCTTCGAGGACAGCGAGAGCAGGAGAGACTCCCTGTTTGTGCCGCACAGACCTGGAGAGCGACGCAACAGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'16-16,'16-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.557 C2=0.617
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.6=44.9)
A:
PF119333=DUF3451=PU(50.4=73.2)
C2:
PF119333=DUF3451=FE(46.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTGGGAAAACCTACA
R:
ATTCTCAGACCCCACGTCCTT
Band lengths:
302-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]