GgaEX6043205 @ galGal3
Exon Skipping
Gene
ENSGALG00000012440 | ZEB2
Description
NA
Coordinates
chr7:34939692-34945432:-
Coord C1 exon
chr7:34945324-34945432
Coord A exon
chr7:34942466-34944435
Coord C2 exon
chr7:34939692-34939872
Length
1970 bp
Sequences
Splice sites
3' ss Seq
GGTTTTAATTATCATTTTAGGTG
3' ss Score
8.03
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CACCAAATGCTGACCCAAGGAGCAGGCAATCGCAAGTTCAAATGCACTGAGTGTGGCAAGGCCTTCAAATATAAACACCATCTGAAGGAACACCTGCGAATTCACAGTG
Seq A exon
GTGAAAAACCGTATGAGTGTCCAAACTGCAAGAAACGTTTCTCGCATTCTGGCTCCTACAGTTCGCACATCAGCAGCAAGAAGTGTATCGGTTTAATCTCTGTAAATGGCAGAATGAGAAACAATATCAAGACGGGTTCTTCTCCTAATTCTGTATCTTCCTCTCCTACTAATTCAGCCATTACACAGCTGAGAAACAAGCTGGAGAATGGCAAACCACTTAGTATGTCTGAACAAACAGGCCTACTGAAAATTAAAACAGAACCACTAGATTTCAATGAATATAAGGTTCTTATGGCCTCACATGGGTTTAGTGCAACTAGTCCTTTTATGAATGGTGGACTTGGAGCAACCAGCCCCTTAGGAGTTCACACTTCTGCTCAAAGTCCGATGCAGCACTTAGGTGTAGGGATGGAAGCACCATTACTTGGCTTTCCTGCAGTAGGCAGTAATTTAAGTGAGGTGCAGAAGGTCCTACAGATCGTGGACAACACAGTTTCCAGGCAGAAAATGGACTGCAAGGCTGAAGAGATCTCCAAGTTGAAGGTTTATCATATGAAGGATTCATGCCCTCAAGCAGAGGAACAAGGAGTTACCTCCCCCAATATCCCCCCTGTGGGTCTTCCAGTAGTAAGTCATAATGGTGCCACTAAAAGTATTATTGACTATACGTTAGAAAAAGTCAATGAAGCCAAAGCTTGCCTCCAGAGCTTAACCACAGACTCGAGGAGACAGCTCAATAACATTAAAAAAGAGAAGCTGCGAACCCTAATAGACCTGGTAACTGAAGATAAGATGATAGAGAACCATAACGTATCCACTCCATTTTCATGCCAGTTCTGTAAGGAAAGCTTTCCTGGTCCCATTCCGTTGCATCAGCATGAGCGTTACCTGTGTAAAATGAATGAAGAGATCAAGGCAGTCCTTCAGCCTCACGAGAACATGGTTCCCAACAAACCTGGAGTGTTTGATAAGCAAACCCTCTTGCTGTCATCAGTACTTTCTGAGAAAGGAATGACTAGCCCCATCAACCCATACAAGGACCACATGTCTGTACTTAAAGCATATTATGCTATGAATATGGAACCCAATTCTGATGAACTACTGAAAATTTCCATTGCTGTTGGCCTTCCTCAGGAATTTGTGAAGGAATGGTTTGAACAAAGAAAAGTCTACCAGTACTCAAGTTCCAGGTCACCATCACTGGAAAGGACCAGTGCCAAGGTGGCGCTGGCTGCCACCAACAACACTCCCACTAAAGACTCTTTGTCAGCCAGATCTCCAATAAAGCCTGTGGACTCTATAACTTCACCATCTATAGCTGAACTCCATAACAGTGTTACTAATTGTGATACTCCTCTCAGGCTAACAAAACCTCCTCATTTTACCAATATGAAACCAGTTGATAAATTGGACCACTCTAGGAGCAATACTCCTTCTCCTTTAAATCTTTCTTCCACATCTTCTAAAAACTCCCATAGTAGTTCTTACACTCCAAACAGTTTCTCTTCTGAGGAGCTTCAGGCTGAGCCTTTGGACTTGTCTTTACCAAAACAAATGAAGGAACCCAAAAGTATTATAGCCACAAAGAACAAAACGAAATCTAATAGTGTAAATTTAGAACACAACAGTGTTTCTTCATCATCTGAAAACTCAGATGAGCCACTGAACTTGACTTTTATCAAGAAGGAGTTTTCTAATTCAAATAACCTGGATAAAAGCACTAACCCAGTATTTGGTATGAACCCATTCAGTGCCAAACCTTTATACACAACACTTCCACCACAAAGCGCATTTCCCCCAGCCACTTTTATGCCACCAGTCCAGACCAGTATTCCTGGGTTGCGACCATACCCAGGACTAGATCAGATGAGCTTCCTACCACATATGGCCTACACCTACCCAACTGGAGCAGCTACTTTTGCTGACATGCAGCAAAGGAGAAAGTACCAGCGGAAACAAGGATTTCAG
Seq C2 exon
GGAGACTTGCTTGATGGAACCCCAGACTACATGTCCGGCCTCGACGACATGACAGACTCCGACTCCTGTCTGTCCCGAAAGAAGATCAAGAAGACGGAAAGTGGCATGTATGCGTGTGACTTATGTGACAAGACATTCCAGAAGAGCAGTTCCCTGCTGCGACACAAATATGAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012440-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.464 C2=0.164
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=27.0)
A:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
C2:
PF134651=zf-H2C2_2=PU(38.5=16.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAAATGCTGACCCAAGGA
R:
GTGCTCATATTTGTGTCGCAGC
Band lengths:
286-2256
Functional annotations
There are 3 annotated functions for this event
PMID: 12714599
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning. ELM ID: ELMI000260; ELM sequence: PLNLS; Overlap: FULL
PMID: 12714599
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning. ELM ID: ELMI000261; ELM sequence: PLDLS; Overlap: FULL
PMID: 12714599
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning. ELM ID: ELMI000262; ELM sequence: PLNLT; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]