GgaEX6043340 @ galGal4
Exon Skipping
Gene
ENSGALG00000012536 | GALNT13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:HGNC Symbol;Acc:HGNC:23242]
Coordinates
chr7:35197390-35212924:+
Coord C1 exon
chr7:35197390-35197507
Coord A exon
chr7:35203277-35203457
Coord C2 exon
chr7:35212785-35212924
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCCGCATGTTTTCGTTTCAGGTT
3' ss Score
11.06
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGATCTTACGATGCAGGAATGGATATCTGGGGTGGCGAGAATCTTGAAATGTCTTTTAGG
Seq A exon
GTTTGGCAGTGTGGTGGCTCCCTTGAGATTGTCACATGCTCACACGTTGGCCATGTCTTCCGTAAAGCAACCCCTTACACCTTCCCTGGTGGCACGGGACATGTCATCAACAAGAACAACAGGAGGCTGGCAGAGGTCTGGATGGATGAGTTTAAAGACTTCTTCTATATAATATCTCCAG
Seq C2 exon
GTGTTGTGAAGGTGGATTATGGAGATGTGTCAGCCAGGAAGGCGCTGAGAGAAGCCCTGAAGTGCAAACCCTTCTCGTGGTACCTGGAGAACATCTACCCCGACTCGCAGATCCCGCGGCGCTACTACTCGCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012536-'19-16,'19-14,20-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTACTATGGCTGGTGG
R:
CTCTCCCAGCGAGTAGTAGCG
Band lengths:
258-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]