DreEX6034930 @ danRer10
Exon Skipping
Gene
ENSDARG00000099227 | galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
Coordinates
chr9:4600190-4606620:-
Coord C1 exon
chr9:4606503-4606620
Coord A exon
chr9:4605415-4605595
Coord C2 exon
chr9:4600190-4600329
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATGTATGTAAACAGATC
3' ss Score
7.22
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AACTCCCACGATGGCAGGAGGTCTGTTCTCTATTGACCGAACGTATTTTGAAGAGATTGGCACCTATGACTCAGGGATGGATATATGGGGAGGCGAAAATCTTGAGATGTCTTTCAGG
Seq A exon
ATCTGGCAATGTGGAGGATCTCTAGAGATAGTGACATGTTCTCACGTCGGACATGTGTTCCGGAAAGCCACACCTTACAGCTTTCCGGGCGGGACTGGTCAGGTGATAAACAAGAACAACAGACGATTGGCTGAAGTCTGGATGGACGAGTTTAAAGATTTCTTCTACATCATCTCACCAG
Seq C2 exon
GTGTGGTTCGGGTAGATTATGGGGATGTTTCTTCTCGGAAGGCTTTGAGAGAATCTCTGAAGTGCAAACCATTCTCATGGTACCTGGAGAACGTATACCCCGATTCTCAGATTCCCCGCAGATATTACTCCCTCGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099227-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.3=6.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAGGAGGTCTGTTCTCT
R:
GAGGGAGTAATATCTGCGGGGA
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]