GgaEX1025962 @ galGal4
Exon Skipping
Gene
ENSGALG00000013135 | GALNT1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RefSeq peptide;Acc:NP_001006381]
Coordinates
chr2:83823633-83832397:-
Coord C1 exon
chr2:83832280-83832397
Coord A exon
chr2:83831175-83831355
Coord C2 exon
chr2:83823633-83823772
Length
181 bp
Sequences
Splice sites
3' ss Seq
AACTGTGCTTTCACTTTCAGATT
3' ss Score
11.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGCCTACAATGGCAGGAGGTCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACGTATGATGCTGGAATGGATATTTGGGGTGGAGAAAACTTAGAAATTTCTTTCAGG
Seq A exon
ATTTGGCAGTGTGGTGGCACTTTGGAAATTGTAACTTGTTCACATGTCGGGCATGTGTTCAGAAAAGCAACACCATATACTTTTCCAGGAGGTACAGGGCAGATAATCAACAAAAATAACAGACGGCTTGCAGAAGTCTGGATGGATGAATTCAAAAACTTTTTTTATATCATTTCCCCAG
Seq C2 exon
GAGTTACTAAAGTTGACTATGGGGACATATCATCACGACTTGGATTGAGACGCAAGCTTCAGTGTAAGCCTTTCTCCTGGTACCTGGAGAATGTTTATCCTGATTCCCAAATTCCACGCCATTATTTTTCTTTGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'29-28,'29-25,32-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.7=45.0),PF027099=Glyco_transf_7C=FE(52.0=100)
A:
PF027099=Glyco_transf_7C=PD(29.3=36.1)
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAATGGCAGGAGGTCTT
R:
CCCCCAAAGAAAAATAATGGCGT
Band lengths:
252-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]