GgaEX1025962 @ galGal3
Exon Skipping
Gene
ENSGALG00000013135 | Q5ZJL1_CHICK
Description
NA
Coordinates
chr2:86087430-86096194:-
Coord C1 exon
chr2:86096077-86096194
Coord A exon
chr2:86094972-86095152
Coord C2 exon
chr2:86087430-86087569
Length
181 bp
Sequences
Splice sites
3' ss Seq
AACTGTGCTTTCACTTTCAGATT
3' ss Score
11.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGCCTACAATGGCAGGAGGTCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACGTATGATGCTGGAATGGATATTTGGGGTGGAGAAAACTTAGAAATTTCTTTCAGG
Seq A exon
ATTTGGCAGTGTGGTGGCACTTTGGAAATTGTAACTTGTTCACATGTCGGGCATGTGTTCAGAAAAGCAACACCATATACTTTTCCAGGAGGTACAGGGCAGATAATCAACAAAAATAACAGACGGCTTGCAGAAGTCTGGATGGATGAATTCAAAAACTTTTTTTATATCATTTCCCCAG
Seq C2 exon
GAGTTACTAAAGTTGACTATGGGGACATATCATCACGACTTGGATTGAGACGCAAGCTTCAGTGTAAGCCTTTCTCCTGGTACCTGGAGAATGTTTATCCTGATTCCCAAATTCCACGCCATTATTTTTCTTTGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013135-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAATGGCAGGAGGTCTT
R:
CCCCCAAAGAAAAATAATGGCGT
Band lengths:
252-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]