MmuEX6000590 @ mm10
Exon Skipping
Gene
ENSMUSG00000000420 | Galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693]
Coordinates
chr18:24269448-24272801:+
Coord C1 exon
chr18:24269448-24269565
Coord A exon
chr18:24271586-24271766
Coord C2 exon
chr18:24272662-24272801
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCGTGTTCTGCTCTTTTCAGATT
3' ss Score
11.04
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACACCTACAATGGCTGGAGGCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCATTTAGG
Seq A exon
ATTTGGCAGTGTGGAGGAACTTTGGAAATAGTGACATGCTCCCATGTTGGTCATGTGTTTCGGAAAGCTACACCTTACACATTTCCAGGAGGGACAGGGCAGATTATCAATAAGAATAACAGGCGGCTTGCAGAAGTATGGATGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAG
Seq C2 exon
GTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTTGGCCTAAGACGTAAACTACAATGCAAACCTTTCTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCTCGTCACTATTTCTCATTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000420_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
ENSMUST00000000430fB10347
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTACAATGGCTGGAG
R:
CCCAATGAGAAATAGTGACGAGGA
Band lengths:
254-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types