DreEX0034150 @ danRer10
Exon Skipping
Gene
ENSDARG00000061335 | galnt1
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2360]
Coordinates
chr16:27196055-27206899:+
Coord C1 exon
chr16:27196055-27196172
Coord A exon
chr16:27198975-27199155
Coord C2 exon
chr16:27206760-27206899
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCTTTATCTGTGTTTATCAGATT
3' ss Score
8.74
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GACCCCGACAATGGCAGGTGGCCTCTTCTCCATAGACAGAGATTATTTCCAGGAGATCGGCACATATGATGCAGGAATGGACATCTGGGGAGGAGAAAACCTGGAGATCTCATTTAGG
Seq A exon
ATTTGGCAGTGTGGCGGGACGCTTGAGATTGTCACATGTTCTCACGTCGGTCACGTGTTTCGTAAAGCAACGCCTTACACGTTCCCTGGTGGAACTGGGCAAATCATCAACAAGAACAACAGACGGCTGGCAGAGGTCTGGATGGACGAGTTCAAGAACTTCTTCTACATCATCTCACCTG
Seq C2 exon
GTGTGACGAAAGTGGATTATGGAGACATCTCAACCAGAACATCCCTGAGACAGAGACTGCAATGCAAGCCCTTCTCCTGGTACCTGGAAAATGTCTACCCAGACTCACAGATACCACGCCACTACTACTCACTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061335-'13-15,'13-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
ENSDART00000140673fB2875
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGGCCTCTTCTCCATA
R:
TCCCAGTGAGTAGTAGTGGCG
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]