DmeEX0009046 @ dm6

Exon Skipping

Gene

Description

The gene Polypeptide N-Acetylgalactosaminyltransferase 5 is referred to in FlyBase by the symbol DmelPgant5 (CG31651, FBgn0031681). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:5072170..5093592. Its molecular function is described by: polypeptide N-acetylgalactosaminyltransferase activity. It is involved in the biological process described with: oligosaccharide biosynthetic process. 17 alleles are reported. The phenotypes of these alleles manifest in: embryonic/larval copper cell; embryonic/larval gut. The phenotypic classes of alleles include: viable; lethal; partially lethal - majority die. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late pupal stages.

Coordinates

chr2L:5074390-5077712:-

Coord C1 exon

chr2L:5077535-5077712

Coord A exon

chr2L:5077077-5077257

Coord C2 exon

chr2L:5074390-5074529

Length

181 bp

Sequences

Splice sites

3' ss Seq

CGACGATGATAAACCCGCAGATT

3' ss Score

4.78

5' ss Seq

CAGGTTCGC

5' ss Score

5.28

Exon sequences

Seq C1 exon

GTACCGAGTGCCATCGCGGGAAATGGCGCGCCGGAATAACGATAGGACTGCTCCGTTGCGAACTCCGACCATGGCCGGTGGTCTGTTCTCCATCGATAAGGATTACTTCTATGAGATTGGCTCCTACGACGAGGGCATGGACATTTGGGGCGGCGAAAATCTGGAGATGTCGTTCCGT

Seq A exon

ATTTGGCAGTGCGGCGGCATTTTAGAAATAATACCCTGCTCCCACGTTGGCCACGTGTTCCGTGACAAATCGCCGTACACCTTCCCCGGCGGCGTGGCCAAAATTGTGCTGCACAATGCGGCCCGGGTGGCCGAAGTTTGGCTGGACGAGTGGCGTGATTTCTATTATTCGATGAGCACAG

Seq C2 exon

GAGCTCGAAAGGCATCGGCTGGCGATGTGAGCGATCGTAAAGCTCTGCGAGATCGCCTCAAATGCAAGAGTTTCCGCTGGTATCTGGAGAACGTTTATCCCGAGAGTTTAATGCCCTTGGATTACTACTATCTGGGCGAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0031681_MULTIEX1-1/2=C1-C2

Average complexity

ME(1-2[99=100])

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion