MmuEX0020007 @ mm9
Exon Skipping
Gene
ENSMUSG00000060988 | Galnt13
Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:MGI Symbol;Acc:MGI:2139447]
Coordinates
chr2:54732466-54913015:+
Coord C1 exon
chr2:54732466-54732583
Coord A exon
chr2:54785800-54785980
Coord C2 exon
chr2:54912876-54913015
Length
181 bp
Sequences
Splice sites
3' ss Seq
GGGATTATTCTTCTCCCCAGATC
3' ss Score
7.95
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGG
Seq A exon
ATCTGGCAATGTGGAGGTTCTTTGGAGATTGTGACTTGCTCTCATGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACATTCCCTGGTGGCACTGGCCATGTCATTAACAAGAACAACAGAAGACTGGCAGAAGTGTGGATGGATGAATTCAAAGATTTCTTCTATATCATATCCCCAG
Seq C2 exon
GTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTCAGAAAAACACTGAGGGAAAATCTGAAGTGTAAGCCTTTTTCTTGGTACCTGGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060988-'10-13,'10-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTACTATGGCTGGTGG
R:
TAACGTCTTGGGATCTGGGAGT
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: