RnoEX0037596 @ rn6
Exon Skipping
Gene
ENSRNOG00000005335 | Galnt13
Description
polypeptide N-acetylgalactosaminyltransferase 13 [Source:RGD Symbol;Acc:735044]
Coordinates
chr3:40356201-40568829:+
Coord C1 exon
chr3:40356201-40356318
Coord A exon
chr3:40399753-40399933
Coord C2 exon
chr3:40568690-40568829
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGGGATTATTCTTCTCCCAGATC
3' ss Score
7.22
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAGAGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGG
Seq A exon
ATCTGGCAATGTGGAGGCTCTTTGGAGATTGTGACTTGCTCTCATGTCGGTCATGTTTTTCGAAAGGCAACTCCATACACCTTTCCTGGTGGCACTGGCCATGTCATTAACAAGAACAACAGAAGACTAGCAGAAGTTTGGATGGATGAATTCAAAGATTTCTTCTATATCATATCCCCAG
Seq C2 exon
GTGTTGTCAAAGTGGATTATGGAGATGTGTCAGTGAGAAAAACACTAAGGGAAAATCTGAAGTGTAAGCCTTTTTCTTGGTACCTAGAAAACATCTATCCGGACTCCCAGATCCCAAGACGTTATTACTCACTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005335-'8-20,'8-14,10-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
ENSRNOT00000048804fB5834
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTACTATGGCTGGTGG
R:
TAACGTCTTGGGATCTGGGAGT
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]