RnoEX6058262 @ rn6
Exon Skipping
Gene
ENSRNOG00000016207 | Galnt1
Description
polypeptide N-acetylgalactosaminyltransferase 1 [Source:RGD Symbol;Acc:620358]
Coordinates
chr18:16169821-16173561:+
Coord C1 exon
chr18:16169821-16169938
Coord A exon
chr18:16172336-16172516
Coord C2 exon
chr18:16173422-16173561
Length
181 bp
Sequences
Splice sites
3' ss Seq
GCGTGTCCTGATCTTCTCAGATT
3' ss Score
7.77
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AACACCTACAATGGCTGGAGGCCTGTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAACCTAGAAATTTCCTTTAGG
Seq A exon
ATTTGGCAGTGTGGAGGGACTCTGGAAATAGTGACGTGCTCCCACGTTGGCCATGTGTTTCGGAAAGCTACGCCGTACACGTTCCCGGGTGGCACGGGGCAGATCATCAACAAGAATAACAGACGGCTCGCGGAGGTGTGGATGGATGAATTCAAGAATTTCTTCTACATAATTTCTCCAG
Seq C2 exon
GTGTTACAAAGGTAGATTATGGTGATATATCATCAAGAGTCGGTCTGAGACATAAACTACAGTGCAAGCCTTTCTCTTGGTACCTAGAAAATATTTATCCCGATTCTCAAATTCCTCGTCACTATTTCTCATTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016207-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053521=Glycos_transf_2=PD(8.6=40.0)
A:
NO
C2:
PF0065217=Ricin_B_lectin=PU(2.5=6.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGCCTGTTTTCAATAGA
R:
TCCCAATGAGAAATAGTGACGAGG
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]