GgaEX6043481 @ galGal3
Exon Skipping
Gene
ENSGALG00000002246 | DENND1B
Description
NA
Coordinates
chr8:2477408-2480256:+
Coord C1 exon
chr8:2477408-2477487
Coord A exon
chr8:2478377-2478593
Coord C2 exon
chr8:2479726-2480256
Length
217 bp
Sequences
Splice sites
3' ss Seq
GCAAAAGATTTTATCTTTAGGTT
3' ss Score
4.96
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ACACGTTTCAACCAGCACCTCAATAACCAGGATTTTACCTTGGATGAAGATGATGATGATGAAATAGAGAGAACAAGCAA
Seq A exon
GTTATCATCAGAAGACAGTGAGGAAGCTTCTGCTTGCTTTTATGATAGCGATGATTCTGGGGACACTGGAATAACTTCACAGCAACAAGGAGAAATGGACTTGCTTGGGGAGATATTGGACACGCTGAGCACACACAGCTCAGACCAAGGAAAGCTTTCAGGAGCAAAGAGTCTGGACTTCTTTAGGTCGATGGATGACATCGATTACAAGACTACG
Seq C2 exon
AATAAGTCGAATGCACCTAGTGAGAGCAACCTTACCCTGCTGTGCAGCAGTGCTAATGACCAGGCAGACTGGAATCTCGGTCAGGATGACACTGTCCTCCATGGGAAACAACTCCCTCCATCTCCAAGAAAACAAAGTTCTGGTGGCCATAGAGAGTCTCTCTCAAACCTGGAAGAGAAAAACAGTGAGAAAACCTTTATTACTGACAAGATGGACACCACTAGTGGCTGTATAGCATCCCCATCTTCAGTACGATCAAGTGACCATTTTGCTTCTCTAGAAAATTTCAAAGTGGGCTATAAGTATGCGAAGCAGAATGAAACACTAAACAGTACCTCAGAAGATCCACTCCCAGCAAATCTTGCTCAACATCCATCCATTCTTGTCCCTTGGGAGAAAGATAGGAAAGAAGGAAATGAAACTGCAGATGAGGGAGGCCTTCTTCAGGAAGTGGTATCTTTATGTAAGCTGAGTTCTGCTTTTCACTATGGTTTAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002246-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.781 C2=0.565
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTTCAACCAGCACCTCAA
R:
AGTGGTGTCCATCTTGTCAGT
Band lengths:
300-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]