MmuEX6027857 @ mm10
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:139167671-139176043:+
Coord C1 exon
chr1:139167671-139167756
Coord A exon
chr1:139168832-139169048
Coord C2 exon
chr1:139169756-139176043
Length
217 bp
Sequences
Splice sites
3' ss Seq
TACCTTGTGTCTCCTTTCAGGAT
3' ss Score
12.83
5' ss Seq
ACGGTTAGT
5' ss Score
7.37
Exon sequences
Seq C1 exon
ACACACTTGAAAAGGCCTCATAAGAGCCTAGATGGTACCCTGTATGATGATGATGATGATGACGATGACATTGAACGGGCAAGCAA
Seq A exon
GATATCTTCTGAAGACGGGGAAGAAACCCGTGCTTATTTCTACGAAAGCGATGACTCCGTTGAAGCCCAGGTGAAGGCTCCTTACTCAGGGGAGATGGACTTACTGGGTGAGATCCTGGACACGCTGAGCACGCACAGCTCTGATCAAGGAAAGCTGGCGCCTGCCAAGAGCCTGGATTTCTTCAGATCCATGGATGACATTGATTACAAGCCTACG
Seq C2 exon
AACAAGTCCAACGCTCCCAGTGAGAATAACCTGGCCCTGCTGTGTGCTTCTGGAGACCAGGGAGAGTGGAATCTCGGGCAGGACGACAGCGCCCTCCATGGCAGGCAACTCCCTCCATCCCCAAGGAAACGCGTTTCCTCTGGTGGGCTGACAGAGTCTCTGTTTATCCTGAAAGAGGAGAGCAGGGAGAAGCCCCTCTGTGCTGACAGCGTAAGTGGCCCTACTGTGGTGGGAAAGCCAGCTCCGACTTCAGGACTGCGTTCCCAGCCTGCTGCTCCTGAAGCTTCCCAAACAGAGAGAGGAAGAGCAGAAGTGAAGCAAACACCAGGTCAGGCTCCACTTCAGTCAGAGGATCTGTCGGTGCCCGGCCCCGGGAGCCGCCAGTCGACTTTTGTTCCCTGGGAGAAGGCTGGCAAAGAGGACACGAAGCCTTCAAAGGATGTCGGACTTCTCCAAGAAGTAGTGTCATTGTGTCACATGTCATGTGACTTCCAACAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268-'42-51,'42-49,53-51=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=0.498 C2=0.793
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATGACATTGAACGGGCAA
R:
CTGGGAACGCAGTCCTGAAGT
Band lengths:
292-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types