BtaEX6070912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012433 | DENND1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N0M9]
Coordinates
chr16:78402085-78405882:-
Coord C1 exon
chr16:78405806-78405882
Coord A exon
chr16:78404447-78404663
Coord C2 exon
chr16:78402085-78402833
Length
217 bp
Sequences
Splice sites
3' ss Seq
CGTGTCCTGTTTTTCTCCAGGTT
3' ss Score
12.51
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TCACGACTCAGGCCTCTGAAGAGCCTGGACGGAGCCCTAGATGCTGACGATGAGGAGGACGCCGAGAGAGCCAGCAA
Seq A exon
GTTGTCCTCTGAAGATGGAGAAGAAGCTTCTGCTTACTTCTACGAAAGTGACGACTCATTTGAACCAAGAGCAAAGGCTCCTTCCCCGGGTGAGATGGACTTGCTGGGTGAGATTCTGGACACGCTGAGCACGCACAGCTCGGACCAGGGGAAGCTGGCAGTGGCCAAGAGCCTGGACTTCTTCAGATCAATGGACGAGATAGACTACAAGCCCACG
Seq C2 exon
AACAAATCCAACGCACCCAGCGAGAGCAACCTGGCCCTGCTGTGCAGCGGCTCCGGGGACCAGGCTGGGTGGCACCGGGGCCAGGACGACAGCGCCCTGCTCGGCCGGCAGTTGCCTCCCTCGCCCAGGAAGCGGCTGTCCTCCAGCGCGGGCACCGACCCTCTGTTCATCCTGGAGGAGGAGGCAGGCGAGCGACCCCTCGGCGCAGGGCAGCCGGGCCCCCTTCCGGGCGCTGGAGCGCCCCCTACGGGGAGGAAGGAAACGCTAAGCCCGACTGTGGAAGACCCGCCGGAGCCGGGCCTGGGGCGGCGCCTGTCCACGTGTGTTCCCTGGGAGAAAGAAGGGAAAGAAGCTCCAGAGACCGCAGAGGGGTCTGGGCTGCTTCAGGAGGTGGTGTCCTTGTGTCACATCACGTCTGCTTTCCAACAAGACCTGCACGTCTCAGGAGGGAGGGCGAGCGGAAACCAAGCTTAGTCAGTGAACGAAGTGCCTGTTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012433-'8-15,'8-14,9-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.671 C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGACGATGAGGAGGAC
R:
GCTTAGCGTTTCCTTCCTCCC
Band lengths:
308-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]