DreEX6099159 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23448008-23453425:+
Coord C1 exon
chr22:23448008-23448078
Coord A exon
chr22:23450675-23450894
Coord C2 exon
chr22:23451944-23453425
Length
220 bp
Sequences
Splice sites
3' ss Seq
GCCTGCGTGTGTTTGTTCAGAAT
3' ss Score
7.83
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TATCAAAACCTGAAGTCATCTCCACACACGCTCTATCCTGACAGTTATAACAATGACGACAATGCTAGCAG
Seq A exon
AATCTCATCTGAGGACAGCGGGGAGGTGCCGTCCTACAATGAGGACAGTGATGAGTCTGATTTAGAGCTTCGGTCTGAAGTCAGTCAGTCAGGACAGATGAACCTGCTGGAGGAGATTCTGGACTCGCTCAGTACATCCCACATCGAGCAGGGCCGACTGTCCGCTGCCAAGAGCCTTGACTTCTTCAGGTCATTCGAAGACCTCGACTACAATCCCAAG
Seq C2 exon
AAAAGCTTCAAGTCTCCTCTGTGCAGTAGTCCTACTGCAACCGGATGTGAAGTAGGAAATGGAGAGCCAGCCGGCTGGAAAACAGGTCAAGATGACAGCGCTGTCCACGGTAAACATCTCCCGCCTTCACCTCGACGCCAAACTAGCTCCTGCTCCCTTCCAGTCCATCCTCCCCCTCCCACCGAAGACATCCCGATGAGGAACTCTCTCCCAGAGACTCCCACAATACAGATCCTGTTTCCCGACATGGAAAAGGCAACCAATTCAGCTGATGGCCTACTGAGCCCCGAAAAAAAGCACCCAGCAGCTCGAAGCCTCTCCAGACAGAAGGTCCTTTCCAGAAAAACCCAGAGGCCCCATCAGGAGCACAAAACAGCAAGCGGACAGCTTTCAGTGCATGTACCCTGGGAGAGGGAAAAGCAGCTCCTGGGCACAGGTATAGAAGGAGACAGTAGTGAGACTCAGGAGAAAGGCTTGTTAGAGGAGATCGAGTCCATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868-'22-33,'22-32,24-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=0.618 C2=0.917
Domain overlap (PFAM):
C1:
PF0301110=PFEMP=PD(7.2=29.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATCTCCACACACGCTCT
R:
CCATGTCGGGAAACAGGATCTG
Band lengths:
308-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]