RnoEX6044452 @ rn6
Exon Skipping
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56234158-56236674:+
Coord C1 exon
chr13:56234158-56234234
Coord A exon
chr13:56235248-56235464
Coord C2 exon
chr13:56236144-56236674
Length
217 bp
Sequences
Splice sites
3' ss Seq
CACCTTCTGTCTCTCCTCAGGAT
3' ss Score
13.25
5' ss Seq
ACGGTTAGT
5' ss Score
7.37
Exon sequences
Seq C1 exon
GCACACTTGAAAAGGCCCCATAAGAGCCTCGACGGCACCCTGTATGATGATGATGATGACATCGAAAGGGCAAGCAA
Seq A exon
GATATCTTCTGAAGACGGTGAAGAAACATCTGCCTATTTCTATGAGAGCGACGACTCTGTTGATGCACAGGTGAAGGCTCCTTACTCAGGTGAGATGGATTTACTGGGCGAGATCCTGGACACGCTGAGCACACACAGCTCTGACCAAGGAAAGCTGGCACCCGCCAAGAGCCTGGATTTCTTCAGATCCATGGACGACATTGACTACAAGCCCACG
Seq C2 exon
AACAAGTCCAACGCTCCCAGTGAGAATAACCTGACCCTACTGTGTGCTTCTGGCGATCAGGGAGAGTGGAATCTCGGGCAGGATGACAGCGCCCTCCATGGCAAGCACCTCCCTCCATCCCCCAGGAAAAGAGTTTGCTCCAGTGGGTTGACAGATTCCCTATTTATCTTGAAAGAGGAGAACACTGAGAAGCCCTTCAGTGCTGACAGTGTAAGTGTCCCTACTGTGGTGGAAAAGTCCGCTTCTACTTCAGATTCCGGTTTCCAGCCAGCCACTCCTGAAGCTTCTCAGACGCATAAAGGAAAACCAGAGGTGAAGCAAACACTAAGTCAAGCTTCAGATGATCTGCTGGTACCCAGCCCTGGGAACCGCCAGTCTACTTTTGTTCCCTGGGAAAAAGCTGGGAAAGAGGAGACGAAGCCTTCAAAAGATGTTGGACTTCTCCAAGAAGTAGTGTCATTGTGTCACATGTCATGTGACTTCCAACAAGGTTTAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063-'47-44,'47-43,49-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.493 C2=0.763
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCGAAAGGGCAAGCAA
R:
CTGGCTGGAAACCGGAATCTG
Band lengths:
292-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]