GgaEX6043644 @ galGal3
Exon Skipping
Gene
ENSGALG00000003164 | F1NQQ1_CHICK
Description
NA
Coordinates
chr8:4769426-4795254:-
Coord C1 exon
chr8:4795120-4795254
Coord A exon
chr8:4778692-4778765
Coord C2 exon
chr8:4769426-4769575
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTAATGTTTCTAGGGA
3' ss Score
7.56
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CATCCCGCTCGTCAACCGGCTGCAGGACGCCTTCGCGGCGCTGGGCCAGAGCTGCCTGCTCGACCTGCCGCAGATCGCGGTGGTGGGAGGGCAGAGCGCCGGCAAGAGCTCCGTGCTGGAGAACTGCGTCTCCAG
Seq A exon
GGATTTTCTTCCACGAGGTTCTGGGATTGTAACAAGACGACCATTGGTGTTGCAACTTGTCACTGCCAAAACAG
Seq C2 exon
AATATGCTGAATTTCTGCACTGCAAAGGGAGAAAGTTTACAGATTTTGATGAAGTTCGTCAGGAAATTGAAGTGGAAACAGATAGAATAACAGGAGTGAACAAAGGGATTTCTTCAATTCCTATTAATTTAAGAATATATTCTCCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=44.4)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCGCTCGTCAACCG
R:
ACTTTCTCCCTTTGCAGTGCA
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]