BtaEX0011747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014319 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr16:40118745-40319531:+
Coord C1 exon
chr16:40118745-40119063
Coord A exon
chr16:40241700-40241773
Coord C2 exon
chr16:40319382-40319531
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTTTTTTCTTAGGGA
3' ss Score
11.12
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GCTGTCAGGAGCGCACTAGAGGCCGGACAGTGGCGGGATCCGACGTCTGGCTGTACCCGGCTGACTAAACCCAGCGCGGCGAGGGCGGCGCGGCCCCGGCTCCCTGCCAGGTCGCAGAGACTAGCAGGGACTAGCGGGCAGCCGGCGGCGCAGGCACAATGGGGAATCGGGAGATGGAGGAGCTCATCCCTCTGGTGAACCGTCTGCAGGATGCCTTCTCCGCGCTGGGACAGAGCTGCCTGCTGGAGCTGCCTCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTCGAGAACTTCGTGGGCAG
Seq A exon
GGACTTTCTCCCTCGAGGGTCAGGCATTGTAACTAGAAGGCCTCTAGTGCTGCAGCTGATTACTTCCAAAGCAG
Seq C2 exon
AATATGCTGAATTTCTACACTGCAAAGGAAAAAAATTTACAGATTTTGATGAAGTTCGCCATGAGATTGAAGCTGAAACAGATCGAGTAACTGGAATGAATAAAGGCATTTCCTCCATACCTATTAATTTACGAGTCTATTCCCCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014319-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=40.8)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCATCCCTCTGGTGAA
R:
CCTTTGCAGTGTAGAAATTCAGCA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development