MmuEX6028688 @ mm9
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:164285491-164408165:-
Coord C1 exon
chr1:164407794-164408165
Coord A exon
chr1:164337466-164337539
Coord C2 exon
chr1:164285491-164285640
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTGTTTGTTTTCAGGGA
3' ss Score
11.74
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTCCTTCGCCTCTCTGGGCTGCGCAAGCGCGTCGTGGGCTGTGAGCTGTCAGGATCCTAGCAGTGGGAGGCAGGGATCGGACATCGGTGCAGGGACTCCGCCGTGTGAGCCCCGCACAGCGACAACCGGGACAAGTGCTTCGAGGCCTGGGCTGCCTGCCAGGTCACACAGTCGAACAGGGACCTGTGGGGCAGTTGGCCGCACAGGCAAGATGGGGAACCGGGAGATGGAAGAGCTGATCCCTCTGGTGAACCGTCTGCAGGACGCTTTCTCGGCTCTGGGACAGAGCTGTCTGCTAGAGCTGCCACAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCAGTGCTCGAGAATTTCGTGGGCAG
Seq A exon
GGACTTTCTTCCTCGAGGCTCAGGCATTGTAACCAGACGGCCTCTTGTACTCCAGCTTGTCACCTCTAAAGCAG
Seq C2 exon
AATATGCCGAGTTTCTACATTGCAAAGGAAAAAAATTTACAGATTTTGATGAAGTTCGACATGAGATCGAAGCAGAAACAGACCGCGTAACAGGAATGAATAAAGGCATCTCTTCTATACCCATTAACCTCCGAGTCTACTCTCCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-'0-3,'0-1,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTAGAGCTGCCACAGAT
R:
TACGCGGTCTGTTTCTGCTTC
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: