GgaEX6043644 @ galGal4
Exon Skipping
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4658395-4678962:-
Coord C1 exon
chr8:4678817-4678962
Coord A exon
chr8:4667437-4667510
Coord C2 exon
chr8:4658395-4658544
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTAATGTTTCTAGGGA
3' ss Score
7.56
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATGGAGGGGCTCATCCCGCTCGTCAACCGGCTGCAGGACGCCTTCGCGGCGCTGGGCCAGAGCTGCCTGCTCGACCTGCCGCAGATCGCGGTGGTGGGAGGGCAGAGCGCCGGCAAGAGCTCCGTGCTGGAGAACTGCGTCTCCAG
Seq A exon
GGATTTTCTTCCACGAGGTTCTGGGATTGTAACAAGACGACCATTGGTGTTGCAACTTGTCACTGCCAAAACAG
Seq C2 exon
AATATGCTGAATTTCTGCACTGCAAAGGGAGAAAGTTTACAGATTTTGATGAAGTTCGTCAGGAAATTGAAGTGGAAACAGATAGAATAACAGGAGTGAACAAAGGGATTTCTTCAATTCCTATTAATTTAAGAATATATTCTCCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-'2-2,'2-0,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=40.8)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATCCCGCTCGTCAAC
R:
ACTTTCTCCCTTTGCAGTGCA
Band lengths:
174-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]