DreEX0027786 @ danRer10
Exon Skipping
Gene
ENSDARG00000032238 | dnm3a
Description
dynamin 3a [Source:ZFIN;Acc:ZDB-GENE-040724-76]
Coordinates
chr20:15006471-15028878:-
Coord C1 exon
chr20:15028657-15028878
Coord A exon
chr20:15011743-15011816
Coord C2 exon
chr20:15006471-15006620
Length
74 bp
Sequences
Splice sites
3' ss Seq
GGTTCATTCTGTTCTTTCAGAGA
3' ss Score
8.26
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CAAGGGAATTGTTTGTTGAAGCCGGTGATACGTGCCGCCGCATCCTCGTGGCTCTGTAACCATGGGTAACCGGGGGATGGAGGAGCTCATCCCGCTGGTGAACCGGCTGCAGGACGCCTTCAGCGCCATAGGACAAAACTGCGACCTGGACCTACCTCAAATCGCGGTGGTCGGGGGTCAGAGTGCAGGCAAAAGCTCTGTACTGGAAAATTTCGTTGGCAG
Seq A exon
AGATTTCCTGCCAAGAGGCTCTGGAATTGTTACAAGGAGACCTCTTGTCCTTCAGCTCATCAGTTCAGCTTCAG
Seq C2 exon
AGCATGCAGAGTTTCTGCACTGTAAAGGAAAGAAGTTTACAGACTTTGATGATGTCCGACGGGAGATCGAAGCAGAGACAGACAGAGTAACGGGAACAAACAAGGGCATTTCTTCCATTCCCATTAACCTTCGTGTCTTCTCTCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032238-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCAAATCGCGGTGGTC
R:
ATGCCCTTGTTTGTTCCCGTT
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]