RnoEX0029068 @ rn6
Exon Skipping
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22458933-22498492:+
Coord C1 exon
chr8:22458933-22459207
Coord A exon
chr8:22489956-22490029
Coord C2 exon
chr8:22498343-22498492
Length
74 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTCTCTTCTCCCAGGGA
3' ss Score
9.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CGGCGAAGGGGAGCCCGGGCGGGCTGGCAGAGCAGAGCAGGAGGAAGCAACGGCCACAGACGCATCGGGACCGCGAGTCGTAGTCGGGGGATCCGCGGGGCGGAGGCGGGCACCATGGGCAACCGCGGGATGGAAGAGCTCATCCCGCTGGTTAACAAGCTGCAGGACGCCTTCAGCTCCATCGGTCAGAGCTGCCACCTGGACCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGTTCGGTGCTCGAGAACTTCGTGGGCCG
Seq A exon
GGACTTCCTTCCACGAGGATCAGGAATTGTCACCCGGAGGCCTCTCATTCTGCAGCTCATCTTTTCCAAAACAG
Seq C2 exon
AATATGCGGAGTTTTTGCACTGCAAGTCCAAAAAGTTTACAGACTTTGATGAAGTCCGGCAGGAGATCGAAGCAGAGACTGACCGGGTCACAGGCACCAACAAAGGCATCTCCCCGGTGCCCATCAACCTTCGGGTCTATTCACCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGCTCCATCGGTCAGA
R:
ATCTCCTGCCGGACTTCATCA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]