DreEX6034296 @ danRer10
Exon Skipping
Gene
ENSDARG00000103054 | DNM2 (2 of 2)
Description
dynamin 2 [Source:HGNC Symbol;Acc:HGNC:2974]
Coordinates
chr1:58174765-58183375:-
Coord C1 exon
chr1:58183073-58183375
Coord A exon
chr1:58174996-58175069
Coord C2 exon
chr1:58174765-58174914
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTTTTCAGGGA
3' ss Score
12.59
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGACCGGATATGAAAAGTTTCTCGCAGACAGTTTTCTGTGTTTCTGACAGCTGGAGTTCGTGTTTGTTTTCGTCCAGTCAAGCGAAGGCGGGTGATGAAGTGAGTTTCTCTGAGCTCCGAGGGTCTGATAAAGCTCGTCATCATGGGGAACCGCGGGATGGAGGACTTGATTCCCCTCATTAACAAGCTGCAGGACGCCTTCAGCTCCATCGGCCAGAGCTGCAACTTGGAGCTGCCGCAGATCGCGGTGGTCGGCGGGCAGAGCGCCGGTAAAAGCTCCGTGCTCGAGAACTTCGTGGGAAG
Seq A exon
GGATTTTCTGCCGAGAGGATCAGGAATCGTCACTCGCAGGCCTCTGATTCTCCAGCTGGTGAACAGTAAAGCTG
Seq C2 exon
AATATGCCGAGTTCCTGCACTGTAAGGGCCGCAAGTTTGTGGACTTTGACGAGGTTCGGATGGAGATTGAAGCAGAAACGGACCGAATCACTGGATCTAACAAGGGAATCTCTGCAGTGCCCATTAACCTGCGCGTTTACTCGCCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103054-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.2=37.0)
A:
PF0035018=Dynamin_N=FE(14.0=100)
C2:
PF0035018=Dynamin_N=FE(28.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGATGGAGGACTTGATTC
R:
GCCCTTACAGTGCAGGAACTC
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]