RnoEX0029025 @ rn6
Exon Skipping
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11370147-11382043:-
Coord C1 exon
chr3:11381844-11382043
Coord A exon
chr3:11370569-11370642
Coord C2 exon
chr3:11370147-11370296
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGACCCCCAACTCATTGCAGGGA
3' ss Score
7.13
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CGGCTGCCGGGATCGCAGCCCGCCGGGCCCGCCGCAACCATGGGCAACCGCGGCATGGAAGACCTCATCCCGCTGGTTAACCGGTTACAGGACGCCTTCTCTGCCATCGGCCAGAACGCGGACCTCGACTTGCCGCAGATCGCCGTGGTAGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAATTTCGTGGGCAG
Seq A exon
GGACTTCTTGCCCCGAGGATCCGGCATCGTCACCCGGCGTCCCCTGGTCCTGCAGCTGGTTAATTCTACCACAG
Seq C2 exon
AATATGCCGAGTTCCTGCACTGCAAGGGGAAGAAATTCACCGACTTCGAGGAGGTGCGCCTGGAGATCGAGGCTGAGACCGACCGAGTCACTGGCACCAACAAGGGCATTTCGCCTGTGCCCATCAACCTGCGTGTCTACTCACCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835-'0-4,'0-2,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACAGGACGCCTTCTCTGC
R:
ACCTCCTCGAAGTCGGTGAAT
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]