MmuEX0015278 @ mm10
Exon Skipping
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32340416-32353263:-
Coord C1 exon
chr2:32353049-32353263
Coord A exon
chr2:32340833-32340906
Coord C2 exon
chr2:32340416-32340565
Length
74 bp
Sequences
Splice sites
3' ss Seq
GACCCCCAAACTCATTGCAGGGA
3' ss Score
6.38
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
AGAGCCAGAGCAGGAGCGGCGGCCGGATCGCAGCCCGCCGGGCCCGCCGCAACCATGGGCAACCGCGGCATGGAAGACCTCATCCCGCTGGTTAACCGGTTACAGGACGCCTTCTCCGCCATCGGCCAGAACGCGGACCTCGACCTGCCGCAGATCGCCGTGGTAGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAATTTCGTGGGCAG
Seq A exon
GGACTTCTTGCCCCGAGGATCTGGCATCGTCACCCGGCGTCCCCTGGTCCTGCAGCTGGTTAATTCTACCACAG
Seq C2 exon
AATATGCCGAGTTCCTGCACTGCAAGGGGAAGAAATTCACCGACTTCGAGGAGGTGCGCCTGGAGATCGAGGCTGAGACCGATCGAGTCACCGGCACCAACAAGGGCATTTCGCCAGTGCCCATCAACCTGCGGGTCTACTCGCCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-'0-5,'0-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCATCCCGCTGGTTAA
R:
TTTCTTCCCCTTGCAGTGCAG
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types