DreEX6008899 @ danRer10
Exon Skipping
Gene
ENSDARG00000010042 | dnm1a
Description
dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
Coordinates
chr5:1223652-1251692:+
Coord C1 exon
chr5:1223652-1223892
Coord A exon
chr5:1244889-1244962
Coord C2 exon
chr5:1251543-1251692
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTTCACAGGGA
3' ss Score
11.37
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GGCGGAGCAGTAGAATAATCGATGCCGCAATAAAGCGCAGTTTCTCCGGCGAGAGCTCGAGTAGGTGACGCGCAGTGAAGATGGGGAACCGCGGGATGGAGGACCTGATTCCGCTGGTCAACCGCATGCAGGATGCCTTCTCCGCCATCGGCCAGAACGCAAACCTGGACCTGCCGCAGATCGCGGTGGTGGGCGGACAGAGCGCCGGGAAAAGCTCCGTGCTCGAGAACTTCGTGGGCAA
Seq A exon
GGATTTCCTCCCGCGTGGATCCGGCATCGTCACCCGTCGTCCTCTTGTCCTGCAGCTTATCAACTGTCCCACAG
Seq C2 exon
AATATGCTGAATTTCTTCACTGTAAGGGGAAAAAGTTCACGGATTTCGATGAGGTTCGTCAGGAGATCGAGGCGGAGACGGATCGAGTCACGGGCCAGAATAAAGGCATCTCTCCTGTCCCCATTAACCTGCGCGTCTACTCTCCAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010042-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.011 C2=0.188
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGTGCTCGAGAACTTC
R:
GTTTGGAGAGTAGACGCGCAG
Band lengths:
177-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]