BtaEX6046365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98834514-98849170:+
Coord C1 exon
chr11:98834514-98834730
Coord A exon
chr11:98848716-98848789
Coord C2 exon
chr11:98849021-98849170
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCACCCTCAATTCACTGCAGGGA
3' ss Score
7.55
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CGAAGCCGGGAGCCCAAGCGGCGGCCGGATCGCAGCCTGCTGGGCCAGCCGCAGCCATGGGCAACCGTGGCATGGAGGATCTCATCCCGCTGGTCAACCGGCTGCAGGATGCCTTCTCCGCCATCGGCCAGAACGCGGACCTTGACCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTCGAGAATTTCGTAGGCAG
Seq A exon
GGACTTCTTGCCCCGAGGATCTGGCATTGTCACGCGACGCCCCCTGGTCCTGCAGCTGGTCAATGCTACTACAG
Seq C2 exon
AATATGCCGAGTTTCTGCACTGCAAGGGGAAGAAATTCACTGACTTCGAAGAGGTGCGCCTGGAGATTGAGGCTGAGACCGACCGGGTGACCGGCACTAACAAGGGCATCTCTCCAGTGCCCATCAACCTCCGCGTTTACTCGCCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0035018=Dynamin_N=PU(11.5=37.0)
A:
PF0035018=Dynamin_N=FE(14.4=100)
C2:
PF0035018=Dynamin_N=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCATCCCGCTGGTCAAC
R:
CTTCCCCTTGCAGTGCAGAAA
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]